
Cancer Biomarkers Analytical Techniques for Discovery
by Hamdan, Mahmoud H.; Desiderio, Dominic M.; Nibbering, Nico M.-
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Summary
Author Biography
Table of Contents
Preface | |
Acknowledgments | |
Introduction | |
Overview | |
Introduction | |
Cancer Biomarkers | |
Phases of Biomarkers Development | |
New Approach to Biomarkers Discovery | |
New and Powerful Technologies | |
Promising Sources for Biomarkers | |
DNA Methylation | |
Mitochondrial DNA Mutations | |
Phosphatidylinositol-3 Kinases (PI3Ks) | |
Profi ling Tyrosine Phosphorylation | |
Proteins Expression | |
Initiatives Relevant to Biomarkers Discovery | |
Initiatives of the Human Proteome Organization (HUPO) | |
Data Mining in Cancer Research | |
Concluding Remarks | |
References | |
Proteomic Platforms for Biomarkers Discovery | |
Surface Enhanced Laser Desorption Ionization | |
Some Basic Considerations | |
Protein Capture Surfaces | |
Enrichment/prefractionation Prior to SELDI Analysis | |
Combinatorial Affi nity | |
Magnetic Beads | |
Stacked Sorbents | |
Organic Solvent Extraction | |
Bioinformatics in SELDI | |
Some Representative SELDI Applications | |
Addressing Reproducibility in SELDI Analysis | |
Limitations and Other Open Questions Regarding Current SELDI | |
Other Open Questions | |
Outlook | |
Two-dimensional Polyacrylamide Gel Electrophoresis | |
Sample Preparation | |
Reducing Sample Complexity | |
Various Nomenclatures In-gel Analysis | |
Multiple-gels Two-dimensional Analyses | |
Two-dimensional DIGE Analysis | |
Multiphoton Detection Imaging | |
Stable-isotope Labeling with Amino Acids in Cell Culture (SILAC) | |
Laser Capture Microdissection | |
MS Analysis of Gel-separated Proteins | |
Representative Applications of 2-DE for Biomarkers Discovery | |
Protein Microarrays | |
Analytical Protein Microarrays | |
Substrates and Protein Attachment Methods | |
Detection Strategies | |
Surface Plasmon Resonance (SPR) | |
Atomic Force Microscopy (AFM) | |
Enzyme-linked Immunosorbent Assay (ELISA) | |
Radio Isotope Labeling | |
Fluorescence Detection | |
Functional Protein Microarrays | |
Reverse-phase Protein Microarrays | |
Future Prospects | |
Multidimensional Liquid Chromatography Coupled to MS | |
Protein Labeling | |
Labeling a Specifi c Amino Acid | |
Stable Isotope Incorporation | |
Limitations of Labeling | |
Chromatographic Separation | |
Three Dimensional Separation | |
Two-dimensional Chromatography | |
Basic Considerations Regarding MudPIT | |
Mass Spectrometry and Data Analysis | |
Data Analysis and Interpretation | |
Application of Multidimensional Chromatography/MS | |
Outlook for Multidimensional LC/MS | |
Imaging Mass Spectrometry | |
Tissue Preparation and Matrix Application | |
MS Acquisition | |
Some Representative Applications of Imaging MS | |
Current Limitations and Potential Developments | |
References | |
Some Existing Cancer Biomarkers | |
Introduction | |
Historic Glimpse at PSA | |
Prostate-specifi c Antigen | |
PSA as a Screening Marker | |
Improving the Specifi city of PSA | |
Free/Complexed PSA | |
PSA Isoforms | |
Impact of Age, Race, and PSA Velocity | |
Looking for Other Solutions | |
Genetic Alterations | |
Phosphorylated Akt | |
Concluding Remarks | |
Existing Biomarkers for Ovarian Cancer | |
Table of Contents provided by Publisher. All Rights Reserved. |
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