| PREFACE |
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xxiii | |
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1 | (10) |
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In Memory of Professor Jia-Xi Lu |
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3 | (4) |
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A Life Affair with Rhizobia – In Memory of Professor Chen Hua-Kui, Academician of the Chinese Academy of Sciences |
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7 | (4) |
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11 | (8) |
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Sustainable Agriculture/Forestry and Biological Nitrogen Fixation |
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Dietrich Werner, Suresh K. Mahna, Vertica Mahobia, B.N. Prasad, Jose M. Barea, Heidemarie Thierfelder, Peter Muller and Pablo Vinuesa |
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13 | (6) |
| SECTION I. NITROGENASE: THE ORIGIN, THE ENZYMES, AND THE CHEMISTRY |
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19 | (32) |
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On the Origin and Evolution of nif Genes |
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21 | (4) |
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Recent Progress in the Biochemistry of Mo-Nitrogenase |
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25 | (4) |
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MgATP Binding and Hydrolysis in Nitrogenase Catalysis |
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Sanchayita Sen and John W. Peters |
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29 | (6) |
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Structural Modeling and Chemical Simulation of the FeMoco Active Center of Nitrogenase |
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Shaowu Du, Qiutian Liu, Beisheng Kang, Changren Chen and Rong Cao |
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35 | (4) |
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A Non-Metal System for Nitrogen Fixation Utilizing Buckminsterfullerene |
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Yoshiaki Nishibayashi, Sakae Uemura, Shin-ichi Takekuma and Zen-ichi Yoshida |
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39 | (2) |
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Chemical Simulation of the Molybdenum Coordination Mode in the FeMo Cofactor by a Series of Molybdenum- or Tungsten-Polycarboxylate Complexes with Sulfide Bridges |
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Dong-Mei Li, Ji-Qing Xu, Yong-Heng Xing, Ying-Jie Lin and Xiao-Hua Zhou |
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41 | (2) |
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Activation of Homocitrate Ligand of FeMo-Cofactor as Mimicked by the Coordination of Homocitrato and its Homologues |
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Z.H. Zhou, S. Ya Hou, Z. Xing Cao, Y Fu Deng, H. Lin Wan, and K. Rui Tsai |
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43 | (3) |
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46 | (5) |
| SECTION II. GENETICS AND REGULATION IN HETEROTROPHS AND PHOTOSYNTHETIC BACTERIA |
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51 | (58) |
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Genetic Regulation of Nitrogen Fixation: Integration of Multiple Signals |
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Richard Little, Isabel Martinez-Argudo, Neil Shearer; Philip Johnson and Ray Dixon |
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53 | (6) |
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The Structural Basis for nif Gene Activation |
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S.R. Wigneshweraraj, P.C. Burrows, P. Bordes, J. Schumacher, M. Rappas, R.D. Finn, W.V. Cannon, X. Zhang and M. Buck |
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59 | (6) |
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Heterocyst Differentiation and Nitrogen Fixation in Anabaena |
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65 | (4) |
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Signal Transduction in Heterocyst Differentiation of the Cyanobacterium Anabaena sp. PCC 7120 |
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Yinhong Zhao, Yunming Shi, Guohua Yang, Ying Zhang, Xu Huang and Jindong Zhao |
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69 | (4) |
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P. Signal Transduction in Cyanobacteria: Novel Mechanisms of Global Nitrogen Control |
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Karl Forchhammer, Annette Heinrich, Nicole Kloft, Mani Maheswaran and Ulrike Ruppert |
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73 | (4) |
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Molecular Signal of Nitrogen Starvation, Insight from the Cyanobacterium Anabaena PCC 7120 |
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Cheng-Cai Zhang, Sophie Laurent and Sylvie Bédu |
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77 | (2) |
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Electron Transport to Nitrogenase in Rhodospirillum rubrum |
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Tomas Edgren and Stephan Nordlund |
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79 | (4) |
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Regulation of Nitrogen Fixation in the Photosynthetic Bacterium Rhodospirillum rubrum: Roles of GlnD and Pn Proteins |
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Yaoping Zhang, Edward L. Pohlmann and Gray P. Roberts |
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83 | (4) |
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Functional Analysis of the NifA GAF Domain of Azospirillurn brasilense: Effect of Tyr-Phe Mutations in NifA and Interaction of the Mutated Proteins with G1nB using the Yeast Two-Hybrid System |
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Sanfeng Chen, Li Liu, Xiaoyu Zhou, Claudine Elmerich and JiLun Li |
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87 | (2) |
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Effects of 2-Oxoglutarate and the P. Homologues nifI1 and nifI2 on Nitrogenase Activity in Cell Extracts of Methanococcus maripaludis |
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J.A. Dodsworth and J.A. Leigh |
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89 | (2) |
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Mechanism of Regulation of Nitrogen Fixation by NifLA in Pseudomonas Stutzeri A1501 |
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Zhihong Xie, Jie Pan, Shuzheng Ping, Ming Chen, Guoying Wang, h Yang, Min Lin and Claudine Elmerich |
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91 | (2) |
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Rhizobial FixL/FixJ System is a Paradigmn of the Two-Component Signal Transducing Systems: A Two-Cylinder Reciprocating Engine Model Of Phosphorylation Reactions |
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93 | (2) |
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95 | (14) |
| SECTION III. FROM GENOMES TO FUNCTION |
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109 | (36) |
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A Report on the Genome of Herbaspirillum seropedicae Strain Z78 |
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Fabio O. Pedrosa and Genopar Consortium |
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111 | (910) |
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Functional Analysis of Genes of Unknown Functions in Sinorhizobium meliloti |
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1021 | |
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J. Cheng, J. Fowler, A. Cowie, R. Zaheer, C. Patten, C. Sibley, P. Chain, Z. Yuan, C. Baron, T. Charles, B. McCarry, P. Summers, J. Xu, E. WeretiInyk, G.B. Golding and T.M. Finan |
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115 | (4) |
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What Can Bacterial Genome Research Teach Us about Iron Uptake in Sinorhizobium meliloti? |
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A. Pühler, A. Becker, J. Buhrmester, T.-C. Chao, S. Rüberg and S. Weidner |
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119 | (4) |
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Structural and Functional Genome Analysis of Lotus japonicus and Mesorhizobium loti |
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S. Sato, T. Kaneko, Y. Nakamura, E. Asamizu, T. Kato and S. Tabata |
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123 | (4) |
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Analyzing a Sinorhizobium meliloti 1021 ORFeome in a Functional Genomics Platform |
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Brenda K. Schroeder, Brent L. House, Michael W. Mortimer, Scott C. Maloney, Casey A. Taylor Kristel L. Ward, Hope T. Ziemkiewicz, Scott Clark, John J. Bovitz, Hao Jin, Svetlana Yurgel and Michael L. Kahn |
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127 | (2) |
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Functional Genomic Analysis of the SDR Family in Sinorhizobium meliloti |
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Sirin Adham, Asha Jacob, David Capstick, Trevor Charles |
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129 | |
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Proteome Analysis on Bacteroid Differentiation of Bradyrhizobium Japonicum USDA |
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110 | (23) |
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Shigeyuki Tajima, Le T-P Hoa, Rie Hamaguchi and Mika Nomura |
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131 | (2) |
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Global Changes in Gene Expression of S. meliloti 1021 Nodule Bacteria in nifA and nifH Mutant Background |
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Zhe-Xian Tian, Hua-Song Zou, Jian Li, Yuan-Tao Zhang, Guan-Qiao Yu, Silvia Rüberg, Anke Becker and Yi-Ping Wang |
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133 | (4) |
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Toward Deciphering the Genome of Frankia alni Strain ACN14a. |
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P. Normand., S. Felix, N. Alloiso, J. Marechal, C. Lavire, A.M. Berry, B.C. Mullin, J., Tomkins, N. Choisne, N. Demange, Y.C. Truong Cong, A. Coulloux, D. Vallenet, S. Cruveiller, C. Médigue |
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137 | (2) |
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139 | (6) |
| SECTION IV. ESTABLISHMENT OF SYMBIOSIS AND NODULE FUNCTION |
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145 | (106) |
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Adam Kondorosi, José Maria Vinardell, Toshiki Uchiumi, Peter Mergaert, Eva Kondorosi |
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147 | (6) |
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Expression Pattern of DMI Genes in Medicago Nodules |
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Rossana Mirabella, Marijke Hartog, Carolien Franken, René Geurts and Ton Bisseling |
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153 | (4) |
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Katharina Pawlowski, Anna Zdyb, Bettina Hause, Cornelia Göbe, Ivo Feussner, Kirill Demchenko |
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157 | (4) |
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Signaling for Nodulation in a Water-Tolerant Legume |
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Marcelle Holsters, Ward Capoen, Jeroen den Herder and Sofie Goormachtig |
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161 | (4) |
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Genetic and Molecular Analysis of Nod Factor Signalling in Medicago truncatula |
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F. Debellé, C. Bres, J. Lévy, B. Ben Amor, J.F. Arrighi, Maillet, J.M. Ane, C. Rosenberg, Dénarié, S. Shaw, G Oldroyd, S. Long, R. Penmetsa, D. Cook, R. Geurts, T. Bisseling, G. Duc and C. Gough |
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165 | (4) |
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Activation and Perception of Calcium Oscillations during nod Factor Signalling |
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Cynthia Gleason, Raka Mitra, Péter Kaló, Christine Galera, Clare Gough, Jean Dénarié, Sharon R. Long and Giles E.D. Oldroyd |
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169 | (4) |
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Functional Genomics of the Regulation of Nodule Number in Legumes |
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Peter M. Gresshoff, Gustavo Gualtieri, Titeki Laniya, Arief Indrasumunar, Akira Miyahara, Sureeporn Nontachaiyapoom, Tim Wells, Bandana Biswas, Pick Kuen Chan, Paul Scott, M. Kinkema, M. Djordjevic, Dana Hoffmann, Lisette Pregelj, Diana M. Buzas, Dong Xi Li, Artem Men, Qunyi Jiang, Cheol-Ho Hwang and Bernard J. Carroll |
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173 | (6) |
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"Activator" and "Inhibitor" Leading to Generation and Stabilization of Symbiotic Organ Development in Legume |
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179 | (4) |
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Regulatory Mechanisms of SYMRK Kinase Activity |
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Satoko Yoshida and Martin Parniske |
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183 | (4) |
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A Method to Enable Continuous Liquid Introduction into an Apoplast of Soybean-Plantlet Leaf and its Application to Elucidating the Supernodulation Trait of Nodl3 |
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Yasuhiro Arima, Hiroko Yamaya and Tadashi Yokoyama |
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187 | (2) |
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Amino Acid Cycling by Rhizobium leguminosarum in Pea Nodules |
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James White, Alex Bourdes, Arthur Hosie, Seonag Kinghorn, Philip Poole |
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189 | (4) |
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Root Nodule Extensins in Infection Thread Development |
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Elizabeth A. Rathbun and Nicholas I Brewin |
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193 | (2) |
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CASTOR and POLLUX, the Twin Genes that are Responsible for Endosymbioses in Lotus japonicus |
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Haruko Imaizumi-Anraku, Naoya Takeda, Martin Parniske, Makoto Hayashi, Shinji Kawasaki |
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195 | (4) |
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The Expression of the Rhizobium tropici guaB Gene is Required in the Early Stages of Bean Nodulation |
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Mónica Collavino, Daniel H. Grasso, Pablo M. Riccillo and O. Mario Aguilar |
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199 | (2) |
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Does the Rhizobial Type III Secretion System of Rhizobium Species NGR234 Affect the Defence Response in Plant Leaves? |
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O. Schumpp, W.J. Deakin, C. Stahelin and W.J. Broughton |
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201 | (2) |
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Mathematical Modeling for Nodule Size Distribution |
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Jun-ichi Ikeda, Ayako Fukunaga, Yuko Suga and Kaneaki Hori |
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203 | (2) |
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Early Events in the Nodulation of Casuarina glauca by Frankia |
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L. Laplaze, S. Svistoonoff M. Obertello, B. Peret, E Auguy, M.O. Sy, V. Hocher, D. Autran, M. Nicole, C. Franche, D. Bogusz |
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205 | (2) |
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Gene Expression in the Root Nodules of Elaeagnus umbellata |
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Chung-Sun An, Ho-Bang Kim, Sang-Ho Lee, Jung Jang Hyun, Chang-Jae Oh, Hyoungseok Lee |
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207 | (2) |
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Diffusible Signal Factors in Nodulation of Discaria trinervis by Frankia |
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Luciano A. Gabbarini and Luis G. Wall |
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209 | (2) |
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Cloning and Expression Studies of furF and cap F in Frankia Strain R43 |
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João Vieira, Pedro Moradas-Ferreira and Fernando Tavares |
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211 | (2) |
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Characterization of Mutants from Rhizobium sp. NGR234 with Defective Expolysaccharide Synthesis |
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C. Staehelin, W.D'Haeze, M.Y. Gao, R.W. Carlson, B.J. Pellock, G.C. Walker, W.R. Streit and W.J. Broughton |
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213 | (2) |
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Isolation of Two New Sinorhizobium meliloti Transcriptional Regulators Required for Nodulation |
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Li Luo, Shi-Yi Yao, Anke Becker, Silvia Rüberg, Guan-Qiao Yu, Jia-Bi Zhu and Hai-Ping Cheng |
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215 | (2) |
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Rhizobial Control of Host-Specificity |
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N.M. Boukli, W.J. Deakin, K. Kambara, H. Kobayashi, C. Marie, X. Perret, A. Le Quéeré, B. Reuhs, M Saad, O. Schumpp, P Skorpil, C. Staehelin, W. Streit and W.J. Broughton |
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217 | (2) |
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The Sinorhizobium melilot nifA Exerts its Signaling Effect for Nodulation in the Host Plants |
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Huasong Zou, Guanqiao Yu and Jiabi Zhu |
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219 | (2) |
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Evolutionary Stability of Rhizobium Mutualism Depends on Legume Host Sanctions |
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R. Ford Denison and E. Toby Kiers |
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221 | (4) |
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225 | (26) |
| SECTION V. TOWARDS SUSTAINABLE AGRICULTURE AND PROTECTION OF THE ENVIRONMENT |
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251 | (86) |
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Ecological Significance of Lumichrome and Riboflavin as Signals in the Rhizosphere of Plants |
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Felix D. Dakora, Sheku Kanu and Viviene N. Maitru |
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253 | (4) |
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Rhizospheric Plant-Microbe Interactions for Sustainable Agriculture |
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Kauser A. Malik, F.Y. Hafeez, M.S. Mirza, S. Hameed, G. Rasul and R. Bilal |
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257 | (4) |
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Genetic Programs for Development of Nodules and Arbuscular Mycorrhiza in Legumes: Solid Facts and Unsolved Problems |
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A.Y. Borisov, V.E. Tsyganov, A.O. Ovtsyna, N.A. Provorov, and I.A. Tikhonovich |
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261 | (4) |
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Microbial Inoculants: A Challenge to Tune the Microbial Metabolites and Signals for Plant Responsiveness in the Field |
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R. Remans, C. Snoeck, E. Luyten, S. Dobbelaere, E. Somers, A. Croonenborghs, J. Michiels and J. Vanderleyden |
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265 | (4) |
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Are Legumes Doing Their Job? The Effect of Herbicides on N2 Fixation in Southern Australian Agricultural Systems |
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Elizabeth A. Drew, Vadakattu VSR Gupta, David K. Roget |
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269 | (2) |
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Non-Symbiotic Bacterial Diazotrophs in Crop-Farming Systems: Can Their Potential for Plant Growth Promotion be Better Exploited? |
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Ivan R. Kennedy, A.T.M.A. Choudhuty, Mihály L. Keeskés, Rodney J. Roughley and Nguyen Thanh Hien |
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271 | (2) |
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Effect of Legume Nodule Hydrogen Uptake Status on Hydrogen-Oxidizing Rhizobacteria and the Rotation of Crops |
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273 | (4) |
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Phosphorous Use Efficiency for Symbiotic Nitrogen Fixation in Common Bean (Phaseolus vulgaris) and its Consequence on Soil P Dynamic |
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Jean-Jacques Drevon, Nora Alkama, Mathew Blair, Aurelio Garcia, German Hernandez, Philippe Hinsinger, Benoit Jaillard, Aline Lopez, Paula Rodino |
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277 | (2) |
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Mutational Analysis to Study the Role of Genetic Factors in Pea Adaptation to Stresses during Development its Symbioses with Rhizobium and Mycorrhizal Fungi |
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Viktor E. Tsyganov, Alexander I. Zhernakov, Anna V. Khodorenko, Pavel Y. Kisutin, Andrei A. Belimov, Vera I. Safronova, Tatyana S. Naumkina, Alexey Y. Borisov, Peter Lindlbad, Karl-Josef Dietz, Igor A. Tikhonovich |
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279 | (4) |
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Effects of Waterlogging on Nitrogen Fixation of a Supernodulating Soybean Genotype, Sakukei 4 |
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T. Matsunami, G.H. Jung, Y. Oki, W.H. Zhang and M. Kokubun |
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283 | (2) |
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Effect of N Application Rate on Nitrogen Fixation and Transfer from Vetch to Barley in Mixed Stand |
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Hyowon Lee, Wongo Kim, Hyungsu Park and Sugon Kim |
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285 | (2) |
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Analysis of the Promotive Effects of Deep Placement of Slow Release Fertilizers on Growth and Seed Yield of Soybean by 15N Dilution Method |
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Tewari Kaushal, Masaru Onda, Sayuri Ito, Akihiko Yamazaki, Hiroyuki Fujikake, Norikuni Ohtake, Kuni Sueyoshi, Yoshihiko Takahashi and Takuji Ohayama |
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287 | (2) |
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Role of Rhizobial Endophytes as Nitrogen Fixers in Promoting Plant Growth and Productivity of Indian Cultivated Upland Rice (Orysa sativa L.) Plants |
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R.K. Singh, R.P.N. Mishra and H.K. Jaiswal |
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289 | (4) |
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Growth, Photosynthesis, Nodule Nitrogen and Carbon Fixation in Desi and Kabuli Genotypes of Chickpea (Cicer Arietinum L.) Under Salt Stress |
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Garg Neera and Ranju Singla |
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293 | (2) |
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Nodule Co-Occupancy of Agrobacterium and Bradyrhizobium with Potential Benefit to Legume Host |
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Sohail Hameed, Fathia Mubeen, Kauser A. Malik and Fauzia Hafeez |
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295 | (2) |
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Salt Stress Adaptation in Alfalfa Bacteroids: Importance of Protein Betaine |
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Karine Mandon, Alexandre Boscari, Jean Charles Trinchant, Laurence Dupont, Geneviève Alloing, Didier Héouart, and Daniel Le Rudulier |
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297 | (4) |
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Isolation of Genes for Salt Tolerance from Sinorhizobium LT11 |
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W. Payakapong, P. Tittabutr, N. Teaumroong, D. Borthakur and N. Boonkerd |
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301 | (2) |
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Regulation of Heme and Iron Metabolism in Bradyrhizobium japonicum |
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Jianhua Yang, Yali Friedman and Mark R. O'Brian |
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303 | (4) |
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Rhizobial Genes Essential for Salt Tolerance |
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Ju Quan Jiang, Wei Wei, Li Shi Xie, Lei Wang and Su Sheng Yang |
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307 | (2) |
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Effect of Low-pH and Aluminum on the Nodulation Signal Transduction in Medicago sativa |
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Min Yang, Xiaofeng Li, Yongxiong Yu and Minghua Gu |
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309 | (2) |
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Further Investigation of the Roles of Poly-3-Hydroxybutyrate (PHB) and Glycogen in Sinorhizobium meliloti Medicago sp. Symbiosis |
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Chunxia Wang, Marsha Saldanha, Xiaoyan Sheng, Kris Shelswell, Trevor C. Charles and Bruno W. Sorbral |
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311 | (2) |
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313 | (24) |
| SECTION VI. MOLECULAR ECOLOGY AND THE DISCOVERY OF NEW NITROGEN FIXERS |
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337 | (94) |
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Diazotrophic Endophytes in Rice: Colonization and Nitrogen Fixation of Herbaspirillum and Clostridium Species |
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Kiwamu Minamisawa, Mu You, Tadashi Abe, Bin Ye, Asami Saito, Makoto Kawahara and Tadashi Sato |
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339 | (6) |
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New Perspectives of Grass-Associated Nitrogen Fixation |
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B. Reinhold-Hurek, F. Battistoni, A. Krause, A. Ramakuma, F. Friedrich, A. Sarkar, M. Böhm, S. Gemmer, L. Miché, L. Zhang and T. Hurek |
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345 | (4) |
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Electron Donation and Alternative Nitrogenases in Cyanobacterial Dinitrogen Fixation |
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Hermann Bothe and Gudrun Boison |
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349 | (6) |
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Role of Unicellular Diazotrophs in the Oceanic Nitrogen Fixation |
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355 | (6) |
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New Nitrogen-Fixing Microorganisms from the Oceans: Biological Aspects and Global Implications |
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Jonathan P. Zehr, Barbara Methe and Rachel Foster |
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361 | (6) |
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Biodiversity and Phylogeny of Rhizobial Germplasm in China |
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Wen Xin Chen, En Tao Wang and Wen Feng Chen |
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367 | (6) |
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The Species Paradigm in Bacteriology: From a Cross-Disciplinary Species Concept to a New Prokaryotic Species Definition (with Emphasis on Rhizobia) |
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Kristina Lindström, Zewdu Terefework, Petri Auvinen, Lays Paulin, Stefan Weidner, Anke Becker, Silvia Rüberg and Helge Gyllenberg |
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373 | (4) |
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Direct Amplification of Rhizobial nodC Sequences from Soil Total DNA and Comparison to nodC Diversity of Root Nodule Isolates |
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Santa Santa, Parveen K. Sharma, Ursula B. Priefer and Juergen Prell |
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377 | (2) |
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Recent Studies on the Rhizobium-Cereal Association |
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Frank B. Dazzo, Youssef G Yanni, Rizk Rizk, M Zidan, Abu-Bakr M Gomaa, Andrea Squartini, Yu-Xiang Jing, Feng Chi and Shi-Hua Shen |
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379 | (2) |
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Ascending Migration of Endophytic Rhizobia from Roots to Leaves inside Rice Plants |
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Feng Chi, Shi-Hua Shen, Hai-Ping Cheng, Yu-Xiang Jing and F.B. Dazzo |
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381 | (2) |
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The Ecology of Azorhizobium caulinodans ORS571 Colonizing on Root Surfaces of Arabidopsis thaliana |
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Taichiro Iki, Toshihiro Aono, Oyaizu Hiroshi |
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383 | (4) |
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Evolutionary Implication of Nitrogenase-Like Proteins in the Plant Kingdom and Prospects for nifGene Transfer in Model Eukaryotes |
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Q. Cheng, J. Yang, A. Day, M Dowson-Day and R. Dixon |
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387 | (4) |
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Novel Mimosa-Nodulating Strains of Burkholderia from South America |
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Euan K. James, Wen-Ming Chen, Sergio M. De Faria, Jean L. Simões-Araujo, Roseangela Straliotto, Rosa M. Pitard, Jui-Hsing Chou, Yi-Ju Chou, Edmundo Barrios, Alan R. Prescott, Janet J. Sprent, Peter W. Young |
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391 | (4) |
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Investigation Approach on Associative Diazotrophs in Plant Microecosystem with Multi-Field of View |
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395 | (3) |
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398 | (33) |
| AUTHOR INDEX |
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431 | |
Other versions by this Author
